Index

_

__init__() (biocypher._create.BioCypherEdge method) (biocypher._create.BioCypherNode method) (biocypher._create.BioCypherRelAsNode method) (biocypher._get.APIRequest method) (biocypher._get.Downloader method) (biocypher._get.FileDownload method) (biocypher._get.Resource method) (biocypher._mapping.OntologyMapping method) (biocypher._ontology.Ontology method) (biocypher._ontology.OntologyAdapter method) (biocypher._translate.Translator method) (biocypher.BioCypher method) (biocypher.output.connect._neo4j_driver._Neo4jDriver method) (biocypher.output.in_memory._pandas.Pandas method) (biocypher.output.write._batch_writer._BatchWriter method) (biocypher.output.write._writer._Writer method) (biocypher.output.write.graph._arangodb._ArangoDBBatchWriter method) (biocypher.output.write.graph._neo4j._Neo4jBatchWriter method) (biocypher.output.write.graph._networkx._NetworkXWriter method) (biocypher.output.write.graph._rdf._RDFWriter method) (biocypher.output.write.relational._csv._PandasCSVWriter method) (biocypher.output.write.relational._postgresql._PostgreSQLBatchWriter method) (biocypher.output.write.relational._sqlite._SQLiteBatchWriter method)

_ArangoDBBatchWriter (class in biocypher.output.write.graph._arangodb) _BatchWriter (class in biocypher.output.write._batch_writer) _Neo4jBatchWriter (class in biocypher.output.write.graph._neo4j) _Neo4jDriver (class in biocypher.output.connect._neo4j_driver) _NetworkXWriter (class in biocypher.output.write.graph._networkx) _PandasCSVWriter (class in biocypher.output.write.relational._csv) _PostgreSQLBatchWriter (class in biocypher.output.write.relational._postgresql) _RDFWriter (class in biocypher.output.write.graph._rdf) _SQLiteBatchWriter (class in biocypher.output.write.relational._sqlite) _Writer (class in biocypher.output.write._writer)

A

APIRequest (class in biocypher._get)

B

biocypher module BioCypher (class in biocypher) biocypher._create module biocypher._get module biocypher._logger module biocypher._mapping module biocypher._misc module

biocypher._ontology module biocypher._translate module biocypher.output.connect module biocypher.output.in_memory module biocypher.output.write module BioCypherEdge (class in biocypher._create) BioCypherNode (class in biocypher._create) BioCypherRelAsNode (class in biocypher._create)

C

create_tree_visualisation() (in module biocypher._misc)

D

Downloader (class in biocypher._get)

E

ensure_iterable() (in module biocypher._misc)

F

FileDownload (class in biocypher._get)

from_pascal() (in module biocypher._misc)

G

get_driver() (in module biocypher.output.connect._neo4j_driver)

get_logger() (in module biocypher._logger) get_writer() (in module biocypher.output.write._get_writer)

M

module biocypher biocypher._create biocypher._get biocypher._logger biocypher._mapping biocypher._misc biocypher._ontology biocypher._translate biocypher.output.connect biocypher.output.in_memory biocypher.output.write

O

Ontology (class in biocypher._ontology)

OntologyAdapter (class in biocypher._ontology) OntologyMapping (class in biocypher._mapping)

P

Pandas (class in biocypher.output.in_memory._pandas)

pascalcase_to_sentencecase() (in module biocypher._misc)

R

Resource (class in biocypher._get)

S

sentencecase_to_pascalcase() (in module biocypher._misc)

sentencecase_to_snakecase() (in module biocypher._misc) snakecase_to_sentencecase() (in module biocypher._misc)

T

to_list() (in module biocypher._misc)

Translator (class in biocypher._translate)