Index

_

__init__() (biocypher._connect._Neo4jDriver method) (biocypher._create.BioCypherEdge method) (biocypher._create.BioCypherNode method) (biocypher._create.BioCypherRelAsNode method) (biocypher._get.Downloader method) (biocypher._get.Resource method) (biocypher._mapping.OntologyMapping method) (biocypher._ontology.Ontology method) (biocypher._ontology.OntologyAdapter method) (biocypher._pandas.Pandas method) (biocypher._translate.Translator method) (biocypher.BioCypher method) (biocypher.write._batch_writer._BatchWriter method) (biocypher.write.graph._arangodb._ArangoDBBatchWriter method) (biocypher.write.graph._neo4j._Neo4jBatchWriter method) (biocypher.write.relational._postgresql._PostgreSQLBatchWriter method) (biocypher.write.relational._sqlite._SQLiteBatchWriter method)

_ArangoDBBatchWriter (class in biocypher.write.graph._arangodb) _BatchWriter (class in biocypher.write._batch_writer) _Neo4jBatchWriter (class in biocypher.write.graph._neo4j) _Neo4jDriver (class in biocypher._connect) _PostgreSQLBatchWriter (class in biocypher.write.relational._postgresql) _SQLiteBatchWriter (class in biocypher.write.relational._sqlite)

B

biocypher module BioCypher (class in biocypher) biocypher._connect module biocypher._create module biocypher._get module biocypher._logger module biocypher._mapping module

biocypher._misc module biocypher._ontology module biocypher._pandas module biocypher._translate module biocypher.write module BioCypherEdge (class in biocypher._create) BioCypherNode (class in biocypher._create) BioCypherRelAsNode (class in biocypher._create)

C

create_tree_visualisation() (in module biocypher._misc)

D

Downloader (class in biocypher._get)

E

ensure_iterable() (in module biocypher._misc)

F

from_pascal() (in module biocypher._misc)

G

get_driver() (in module biocypher._connect)

get_logger() (in module biocypher._logger) get_writer() (in module biocypher.write._write)

M

module biocypher biocypher._connect biocypher._create biocypher._get biocypher._logger biocypher._mapping biocypher._misc biocypher._ontology biocypher._pandas biocypher._translate biocypher.write

O

Ontology (class in biocypher._ontology)

OntologyAdapter (class in biocypher._ontology) OntologyMapping (class in biocypher._mapping)

P

Pandas (class in biocypher._pandas)

pascalcase_to_sentencecase() (in module biocypher._misc)

R

Resource (class in biocypher._get)

S

sentencecase_to_pascalcase() (in module biocypher._misc)

sentencecase_to_snakecase() (in module biocypher._misc) snakecase_to_sentencecase() (in module biocypher._misc)

T

to_list() (in module biocypher._misc)

Translator (class in biocypher._translate)