Table of Contents
- Introduction
- Get Involved!
- Installation
- Configuration
- Quickstart
- Adapters
- BioCypher Tutorial - Basics
- BioCypher Tutorial - Handling Ontologies
- BioCypher Tutorial - Adapters
- Interacting with Neo4j
- Tutorial - Neo4j
- Submodule documentation
_driver.py
: the main BioCypher interface_mapping.py
: Mapping of data inputs to KG ontology_ontology.py
: Ontology parsing and manipulation_create.py
: Base Classes for Node and Edge Representations in BioCypher_translate.py
: Translation Functionality for Implemented Types of Representation_write.py
: Write the Graph to CSV Files for quick ‘admin import’_logger.py
: Logging_misc.py
: Miscellaneous utility functions