Table of Contents
- Introduction
- User Experiences
- Get Involved!
- Installation
- Configuration
- Quickstart
- Adapters
- BioCypher Tutorial - Basics
- BioCypher Tutorial - Handling Ontologies
- BioCypher Tutorial - Adapters
- Interacting with Neo4j
- Tutorial - Neo4j
- R and Bioconductor
- Submodule documentation
_core.py
: The main BioCypher interface_write.py
: Write the Graph to various formats for batch import_connect.py
: On-line functionality for interaction with a DBMS_mapping.py
: Mapping of data inputs to KG ontology_ontology.py
: Ontology ingestion, parsing, and manipulation_create.py
: Base classes for node and edge representations in BioCypher_translate.py
: Translation functionality for implemented types of representation_logger.py
: Logging_misc.py
: Miscellaneous utility functions