BioCypher
0.6.1
Table of Contents
Democratising Knowledge Graphs
User Experiences
Get Involved!
Installation
Configuration
Quickstart
Adapters
Output
Example Notebook: BioCypher and Pandas
Tutorial - Basics
Tutorial - Handling Ontologies
Tutorial - Adapters
Standalone Docker Image
R and Bioconductor
API Reference
The main BioCypher interface
Database creation by file
In-memory Pandas knowledge graph
Database creation and manipulation by Driver
Download and cache functionality
Ontology ingestion, parsing, and manipulation
Mapping of data inputs to KG ontology
Base classes for node and edge representations in BioCypher
Translation functionality for implemented types of representation
Logging
Miscellaneous utility functions
BioCypher
API Reference
biocypher._misc.create_tree_visualisation
View page source
biocypher._misc.create_tree_visualisation
biocypher._misc.
create_tree_visualisation
(
inheritance_graph
:
Union
[
dict
,
Graph
]
)
→
Tree
Creates a visualisation of the inheritance tree using treelib.