About the BioCypher ecosystem
The BioCypher ecosystem facilitates research in biology and medicine by streamlining the scientific workflow. It provides a suite of tools that help manage knowledge in various ways, from building knowledge graphs to querying them with AI.
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Bespoke libraries
Automated and tested workflows for common and tedious tasks.
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Reducing redundancy
Sharing resource adapters for data sources, AI models, etc.
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Robust assistance
AI agents that can help with low-level tasks, letting you focus on the big picture.
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Community support
Share your workflows, ask questions, and get help from the community.
The tools
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BioCypher
A framework for the creation of knowledge graphs in biology and medicine.
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BioChatter
A framework for building biomedical AI agents.
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BioContext
A community registry for biomedical MCP servers.
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BioGather
A framework for extracting biological data from text and other modalities. Coming soon.
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Biotope
A unified interface for accessing BioCypher ecosystem resources.
Explore
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Philosophy
The context-aware principle behind the ecosystem.
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Timeline and publications
Milestones, papers, and releases from the ecosystem.
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Sponsors
The institutions and funders that support the work.
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Community
Workshops, contribution guides, and how to join.
Info
This documentation is composed of the individual docs for the single packages. These individual docs are also hosted individually, which enables a versioned documentation history and direct editing functionality. If you need this, go to the individual BioCypher and BioChatter docs directly.