Tutorial Catalog

Browse all BioCypher tutorials by difficulty level.

Only tutorials tagged with both tutorial and a difficulty level are included here.

Beginner

Tutorial	Focus	Link
BioCypher Agent API Guide	Use the Agent API to create a graph, add nodes and edges, query and analyse it, and persist it to and from JSON.	Open tutorial
Hands-on Building Graphs with OntoWeaver, BioCypher and Neo4j	Describe a synthetic protein interaction table with an OntoWeaver YAML mapping, run OntoWeaver to build the graph with BioCypher, and import and query it in Neo4j.	Open tutorial
🧑‍💻 Agent-supported hands-on Building Graphs with BioCypher (offline mode) and Neo4j	Connect the BioCypher MCP to your IDE, explore and model a synthetic protein interaction dataset, instruct an agent to create, test and document an adapter and a graph script, build the graph in offline mode, and import and query it in Neo4j.	Open tutorial
🧑‍💻 Hands-on Building Graphs with BioCypher (offline mode) and Neo4j	Set up a BioCypher project, model a synthetic protein interaction dataset as a graph, write an adapter and schema configuration, build the graph in offline mode, and import and query it in Neo4j.	Open tutorial

Intermediate

Tutorial	Focus	Link
Tutorial - Handling Ontologies	Configure and inspect ontology-backed schemas, extend models with explicit and implicit inheritance, and work with synonyms and hybrid ontologies.	Open tutorial

Advanced

Tutorial	Focus	Link
No tutorials yet	-	-