The BioCypher Ecosystem
Welcome to the integrated documentation for the BioCypher ecosystem. Our mission is to facilitate research, particularly in biology and medicine, by streamlining the scientific workflow. We do this by providing a suite of tools that help manage knowledge in various ways.
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Bespoke libraries
Automated and tested workflows for common and tedious tasks.
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Reducing redundancy
Sharing resource adapters for data sources, AI models, etc.
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Robust assistance
AI agents that can help with low-level tasks, letting you focus on the big picture.
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Community support
Share your workflows, ask questions, and get help from the community.
This documentation covers:
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BioCypher
A framework for the creation of knowledge graphs in biology and medicine.
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BioChatter
A framework for building biomedical AI agents.
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BioGather
A framework for extracting biological data from text and other modalities. Coming soon.
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Biotope
A unified interface for accessing BioCypher ecosystem resources.
Info
This documentation is composed of the individual docs for the single packages. These individual docs are also hosted individually, which enables a versioned documentation history and direct editing functionality. If you need this, go to the individual BioCypher and BioChatter docs directly.