Timeline and Publications

Hackathon

2025-12-01

ELIXIR BioHackathon Germany 2025; contributions to BioCypher / BioChatter to load systems biology models.

Journal publication

2025-11-06

BioContext published in Nature Biotechnology. Website launched at biocontext.ai.

Hackathon

2025-11-03

ELIXIR BioHackathon Europe 2025; contributions to EDAM Ontology MCP server.

Journal publication

2025-10-27

Medical benchmarking study publised in npj Digital Medicine.

Preprint publication

2025-07-25

BioContext preprint published.
Preprint

Karenina Launch

2025-06-27

Karenina start of development.

Preprint publication

2025-04-29

Clinical benchmarking study preprint published.
Preprint

BioGather Launch

2025-02-10

BioGather start of development.

Journal publication

2025-01-22

BioChatter peer-reviewed in Nature Biotechnology.
Self-archived here

Hackathon

2024-12-09

ELIXIR BioHackathon Germany 2024; contributions to BioChatter manuscript.

Hackathon

2024-11-11

ELIXIR Plant community hackathon in Versailles.
Preprint

Hackathon

2024-11-04

ELIXIR BioHackathon Europe 2024—Bioconductor, EDAM Ontology, and bio.tools.
Preprint

Journal publication

2024-06-18

Perspective on molecular causality in the advent of foundation models in EMBO Molecular Systems Biology.
Read it here

Hackathon

2023-12-11

ELIXIR BioHackathon Germany 2023; contributions to BioChatter manuscript.

Journal publication

2023-06-19

BioCypher peer-reviewed in Nature Biotechnology.
Read it here
Read the self-archived version on Zenodo
Read the online version

Preprint publication

2023-05-10

BioChatter preprint v1 published on arXiv.
Read it here

BioChatter Launch

2023-04-03

BioChatter start of development.

Preprint publication

2022-12-27

BioCypher preprint v1 published on arXiv.
Read it here

BioCypher Launch

2021-09-10

Start of BioCypher development.